| Publications |
|
Graphs, Complex Networks and Combinatorics Bärtschi, A., Geissmann, B., Graf, D., Hruz, T., Penna, P., and Tschager, T. (2016). On computing the total displacement number via weighted motzkin paths. In Inter- national Workshop on Combinatorial Algorithms, pages 423–434. Springer, Cham. T. Hruz, U. Peter, Nongrowing Preferential Attachment Random Graphs. Internet Mathematics
Vol. 6, Iss. 4, 2011. T. Hruz, S. Geisseler, M. Schoengens, Parallelism in simulation and modeling of scale-free complex networks. Parallel Computing, 36(8):469-485, 2010. U. Peter, T. Hruz, Distribution Hierarchies in Directed Networks,
Technical Report of the Department of Computer Science 621, ETH Zurich, 2009. U. Peter, T. Hruz, Clustering Signature in Complex Social Networks,
Proceedings of the 2009 IEEE International Conference on Social Computing
(SocialCom-09), Vancouver, Canada 2009. Hruz, T., Natora, M., Agrawal, M., Higher-order
distributions and nongrowing complex networks without multiple
connections. Physical Review E 77, 046101, APS 2008. Hruz, T., Agrawal, M., Natora, M., Color-Swap
Models for Non-growing Scale-free Networks, Proceedings of NetSci'2008,
International Conference on Network Science and Its Applications,
Norwich, UK, 2008. Hruz, T., Agrawal M., Natora, M., Simulation
of Stochastic Processes for Non-growing Scale-free Networks. Technical
Report, Institute of Theoretical Computer Science, 554, ETH Zurich, 2007.
Bioinformatics Frank, Y., Hruz, T., Tschager, T., and Venzin, V. (2018). Improved de novo peptide sequencing using lc retention time information. Algorithms for Molecular Biology, 13(1):1–16. Zimmermann, P., Bleuler, S., Laule, O., Martin, F., Ivanov, N. V., Campanoni, P., Oishi, K., Lugon-Moulin, N., Wyss, M., Hruz, T., et al. (2014). Expressiondata- a public resource of high quality curated datasets representing gene expression across anatomy, development and experimental conditions. BioData mining, 7(1):18. Hruz, T., Wyss, M., Lucas, C., Laule, O., von Rohr, P., Zimmermann, P., and Bleuler, S. (2013). A multilevel gamma-clustering layout algorithm for visualization of biological networks. Advances in bioinformatics, 2013. Prasad, A., Kumar, S. S., Dessimoz, C., Bleuler, S., Laule, O., Hruz, T., Gruissem, W., and Zimmermann, P. (2013). Global regulatory architecture of human, mouse and rat tissue transcriptomes. BMC genomics, 14(1):716. Hruz, T., Wyss, M., Docquier, M., Pfaffl, M., Masanetz, S., Borghi, L., Verbrugghe, P., Kalaydjieva, L.,
Bleuler, S., Laule, O., Descombes, P., Gruissem, W., Zimmermann, P.,
RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization, BMC Genomics 2011, 12:156. Hruz, T., Laule, O., Szabo, G., Wessendorp, F.,
Bleuler, S., Oertle, L., Widmayer, P., Gruissem, W., Zimmermann, P.,
Genevestigator V3: A reference expression database for the meta-analysis
of transcriptomes, Advances in Bioinformatics, 2008. Zimmermann, P., Laule, O., Schmitz, J., Hruz,
T., Bleuler, S., Gruissem, W., Genevestigator extends transcriptome
meta-analysis and biomarker search to rice and barley. Molecular Plant,
2008. Laule, O., Hirsch-Hoffmann, M., Hruz, T.,
Gruissem, W., Zimmermann, P., Web-based analysis of the mouse
transcriptome using Genevestigator, BMC Bioinformatics, 7, 311, BioMed
Central, 2006. Computational Geometry and Computer graphics Schöngens, M., and Hruz, T., Partially
Specified Nearest Neighbor Search, Proceedings of the 18th
Annual International Computing and Combinatorics Conference
(COCOON 2012), 2012. To appear. Schöngens, M., and Hruz, T., A Simple
Framework for the Generalized Nearest Neighbor Problem,
Proceedings of the 13th Scandinavian Symposium and Workshops on
Algorithm Theory (SWAT 2012), F.V. Fomin and P. Kaski (Eds.):
SWAT 2012, LNCS 7357, pp. 83–94, 2012. Povazan, I., Hruz, T.,
Parallel Line: a Unified Solution, The Fifth International
Conference in Central Europe on Computer Graphics and
Visualization'97 , WSCG '97, Plzen, Czech Republic, 1997.
Hruz, T., Povazan, I., Gosiorovsky,
R., Hidden Line Problem Formulated as a Set Union Problem,
The Fourth International Conference in Central Europe on
Computer Graphics and Visualization'96 , WSCG '96, Plzen,
Czech Republic, 1996. Hruz, T., Povazan, I., A Note to
the Structure of Bresenham Slice Algorithm, The Third
International Conference in Central Europe on Computer
Graphics and Visualization'95 , WSCG '95, Plzen, Czech
Republic, 1995. Hruz, T., Povazan, I., Raster Space
Solution of Hidden Line Problem for Projected Grid Surfaces,
International Conference on CAD Technologies in Mechanical
Engineering, Slovak Technical University, Bratislava, 1993.
Resilience and Risc Hupp, D., Hruz, T., and Mock, R. G. (2020). Quantifiable resilience analytics of power grids by simulating power flows. In European Safety and Reliability Conference, ESREL 2020, accepted for publication. Mock, R. G., Truninger, B., Brunner, P., Pociuipa, G., and Hruz, T. (2015b). It risk audit tool to enhance it risk assessments. In European Safety and Reliability Conference, ESREL 2015, Zürich, Switzerland, 7-10 September 2015, pages 4029–4036. Taylor & Francis. Mock, R. G., Truninger, B., Brunner, P., and Hruz, T. (2015a). Enhancement of it risk assessments by uml. In European Safety and Reliability Conference, ESREL 2014, Wroclaw, Poland, 14-18 September 2014, pages 1531–1537. Taylor & Francis. Parallel Algorithms and Computational Number Theory Hruz, T., Fortin, D., Parallelism in
Hermite and Smith Normal Forms, Research Report No 2077,
INRIA, 1994. Hruz, T., A Note to Hermite and
Smith Normal Form Computation, Research Report, 1995.
Ill-posed Problems and Predictive Control Hruz, T., Ill-posed Problems in Close-loop
Predictive Control, Proceedings of Inverse Problems in Engineering Theory
and Practise, 3rd Int. Conference on Inverse Problems in Engineering,
June 13-18, Port Ludlow, Washington, USA, 1999. Hruz, T., Inversion of Ill-posed
Problems in Control of Distributed Parameter Systems,
Ph.D. Thesis, 1997. Hruz, T., Rohal-Ilkiv, B.,
Orszaghova, Z., An Optimal Boundary Control of Thermal
System with Experimental Verification, Proc. Second
International Conference on Inverse Problems in Engineering,
June 1996, Le Croisic, France. Rohal-Ilkiv, B., Orszaghova, Z., and
Hruz, T., A Stepwise Technique for Inverse Problem in
Optimal Boundary Control of Thermal Systems, Proc. First
International Conference on Inverse Problems in Engineering,
June 1993, in "Inverse Problems in Engineering: Theory and
Practice" Zabaras, Woodbury, Raynaud, editors, ASME Book No.
I00357. Software Engineering Hruz, T., Hirsch-Hoffmann, M., Gruissem, W.,
Zimmermann, P., Reducing Java internet project risks: a case study of
public measurement of client component functionality in the user
community, Proceedings of the 4th international symposium on Principles
and practice of programming in Java, ACM ICPS 178, 199-202, ACM Press,
New York, 2006. Graf, L., Hruz, T., Schoenbaechler, M., Role Based
Access Control, Wer was darf. IX, 9, Heise, Hannover, 2005. Pasquarelli, A., Hruz, T., Airport
Management Database in a Simulation Environment, Proceedings
of the HPCN Europe 2000, High Performance Computing and
Networking (M. Bubak, H. Afsarmanesh, R. Williams,
B. Hertzberger, Eds.), Lecture Notes in Computer Science
1823, Springer-Verlag, 2000. Hruz, T., Becka, M., Pasquarelli, A.,
SEEDS: Airport Management Database System, Proceedings of
the 6th International Euro-Par Conference, Euro-Par2000
Parallel Processing (A.Bode, T.Ludwig, W.Karl,
R.Wism\"uller, Eds.), Lecture Notes in Computer Science
1900, Springer-Verlag, 2000, pp. 861--868. Hruz, T., Koren, L., C-like
Interpreter Framework for Scientific Computing,
Computer-Intensive Methods in Control and Signal Processing,
IEEE Workshop CMP'94, Prague, 1994. Hruz, T., Koren, L., Clif: C-like
Interpreter Framework, 1992-1999 Koren, L., Hruz, T., Clif programmers
guide, 1999 |
| Patents |
|
Czech patent 280187, June the 14th, 1995, Method and Apparatus for Parallel Rendering of Line Segment, I. Povazan, T. Hruz, R. Lazar. European patent No. 1386296, Method for Secure Payment with Micropayment Capabilities, T. Hruz, V. Botka and J. Stary. |