Publications

Complex Networks

T. Hruz, U. Peter, Nongrowing Preferential Attachment Random Graphs. Internet Mathematics Vol. 6, Iss. 4, 2011.
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T. Hruz, S. Geisseler, M. Schoengens, Parallelism in simulation and modeling of scale-free complex networks. Parallel Computing, 36(8):469-485, 2010.
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U. Peter, T. Hruz, Distribution Hierarchies in Directed Networks, Technical Report of the Department of Computer Science 621, ETH Zurich, 2009.
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U. Peter, T. Hruz, Clustering Signature in Complex Social Networks, Proceedings of the 2009 IEEE International Conference on Social Computing (SocialCom-09), Vancouver, Canada 2009.
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Hruz, T., Natora, M., Agrawal, M., Higher-order distributions and nongrowing complex networks without multiple connections. Physical Review E 77, 046101, APS 2008.
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Hruz, T., Agrawal, M., Natora, M., Color-Swap Models for Non-growing Scale-free Networks, Proceedings of NetSci'2008, International Conference on Network Science and Its Applications, Norwich, UK, 2008.
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Hruz, T., Agrawal M., Natora, M., Simulation of Stochastic Processes for Non-growing Scale-free Networks. Technical Report, Institute of Theoretical Computer Science, 554, ETH Zurich, 2007.
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Bioinformatics

Hruz, T., Wyss, M., Docquier, M., Pfaffl, M., Masanetz, S., Borghi, L., Verbrugghe, P., Kalaydjieva, L., Bleuler, S., Laule, O., Descombes, P., Gruissem, W., Zimmermann, P., RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization, BMC Genomics 2011, 12:156.
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Hruz, T., Laule, O., Szabo, G., Wessendorp, F., Bleuler, S., Oertle, L., Widmayer, P., Gruissem, W., Zimmermann, P., Genevestigator V3: A reference expression database for the meta-analysis of transcriptomes, Advances in Bioinformatics, 2008.
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Zimmermann, P., Laule, O., Schmitz, J., Hruz, T., Bleuler, S., Gruissem, W., Genevestigator extends transcriptome meta-analysis and biomarker search to rice and barley. Molecular Plant, 2008.
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Laule, O., Hirsch-Hoffmann, M., Hruz, T., Gruissem, W., Zimmermann, P., Web-based analysis of the mouse transcriptome using Genevestigator, BMC Bioinformatics, 7, 311, BioMed Central, 2006.
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Computational Geometry and Computer graphics

Schöngens, M., and Hruz, T., Partially Specified Nearest Neighbor Search, Proceedings of the 18th Annual International Computing and Combinatorics Conference (COCOON 2012), 2012. To appear.
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Schöngens, M., and Hruz, T., A Simple Framework for the Generalized Nearest Neighbor Problem, Proceedings of the 13th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2012), F.V. Fomin and P. Kaski (Eds.): SWAT 2012, LNCS 7357, pp. 83–94, 2012.
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Povazan, I., Hruz, T., Parallel Line: a Unified Solution, The Fifth International Conference in Central Europe on Computer Graphics and Visualization'97 , WSCG '97, Plzen, Czech Republic, 1997.
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Hruz, T., Povazan, I., Gosiorovsky, R., Hidden Line Problem Formulated as a Set Union Problem, The Fourth International Conference in Central Europe on Computer Graphics and Visualization'96 , WSCG '96, Plzen, Czech Republic, 1996.
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Hruz, T., Povazan, I., A Note to the Structure of Bresenham Slice Algorithm, The Third International Conference in Central Europe on Computer Graphics and Visualization'95 , WSCG '95, Plzen, Czech Republic, 1995.
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Hruz, T., Povazan, I., Raster Space Solution of Hidden Line Problem for Projected Grid Surfaces, International Conference on CAD Technologies in Mechanical Engineering, Slovak Technical University, Bratislava, 1993.
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Parallel algorithms and computational number theory

Hruz, T., Fortin, D., Parallelism in Hermite and Smith Normal Forms, Research Report No 2077, INRIA, 1994.
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Hruz, T., A Note to Hermite and Smith Normal Form Computation, Research Report, 1995.
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Ill-posed problems and predictive control

Hruz, T., Ill-posed Problems in Close-loop Predictive Control, Proceedings of Inverse Problems in Engineering Theory and Practise, 3rd Int. Conference on Inverse Problems in Engineering, June 13-18, Port Ludlow, Washington, USA, 1999.
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Hruz, T., Inversion of Ill-posed Problems in Control of Distributed Parameter Systems, Ph.D. Thesis, 1997.
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Hruz, T., Rohal-Ilkiv, B., Orszaghova, Z., An Optimal Boundary Control of Thermal System with Experimental Verification, Proc. Second International Conference on Inverse Problems in Engineering, June 1996, Le Croisic, France.
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Rohal-Ilkiv, B., Orszaghova, Z., and Hruz, T., A Stepwise Technique for Inverse Problem in Optimal Boundary Control of Thermal Systems, Proc. First International Conference on Inverse Problems in Engineering, June 1993, in "Inverse Problems in Engineering: Theory and Practice" Zabaras, Woodbury, Raynaud, editors, ASME Book No. I00357.
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Software engineering

Hruz, T., Hirsch-Hoffmann, M., Gruissem, W., Zimmermann, P., Reducing Java internet project risks: a case study of public measurement of client component functionality in the user community, Proceedings of the 4th international symposium on Principles and practice of programming in Java, ACM ICPS 178, 199-202, ACM Press, New York, 2006.
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Graf, L., Hruz, T., Schoenbaechler, M., Role Based Access Control, Wer was darf. IX, 9, Heise, Hannover, 2005.
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Pasquarelli, A., Hruz, T., Airport Management Database in a Simulation Environment, Proceedings of the HPCN Europe 2000, High Performance Computing and Networking (M. Bubak, H. Afsarmanesh, R. Williams, B. Hertzberger, Eds.), Lecture Notes in Computer Science 1823, Springer-Verlag, 2000.
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Hruz, T., Becka, M., Pasquarelli, A., SEEDS: Airport Management Database System, Proceedings of the 6th International Euro-Par Conference, Euro-Par2000 Parallel Processing (A.Bode, T.Ludwig, W.Karl, R.Wism\"uller, Eds.), Lecture Notes in Computer Science 1900, Springer-Verlag, 2000, pp. 861--868.
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Hruz, T., Koren, L., C-like Interpreter Framework for Scientific Computing, Computer-Intensive Methods in Control and Signal Processing, IEEE Workshop CMP'94, Prague, 1994.
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Hruz, T., Koren, L., Clif: C-like Interpreter Framework, 1992-1999
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Koren, L., Hruz, T., Clif programmers guide, 1999
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Patents

Czech patent 280187, June the 14th, 1995, Method and Apparatus for Parallel Rendering of Line Segment, authors I. Povazan, T. Hruz, R. Lazar.

EPO patent application, Method for Secure Payment with Micropayment Capabilities, authors T. Hruz, V. Botka and J. Stary.